Difference between revisions of "Template:Create consensus from alignments"
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On the Grid form select sequences (cells) to include in the analysis. Then click Create consensus from alignments option in the '''Selected cells (rows)''' menu. Select desired alignment algorithm (default is set to global alignment) and double-check remaining options, then click Done button to create consensus. <br> | On the Grid form select sequences (cells) to include in the analysis. Then click Create consensus from alignments option in the '''Selected cells (rows)''' menu. Select desired alignment algorithm (default is set to global alignment) and double-check remaining options, then click Done button to create consensus. <br> | ||
[[File:GetConsensusSQsMafft.png]] | [[File:GetConsensusSQsMafft.png]] | ||
| − | <br> Note: Greatly increasing the number of randomly selected sequences will significantly prolong already time demanding analysis, especially when using the accurate algorithms for larger datasets. For details on strategies see MAFFT. | + | <br> Note: Greatly increasing the number of randomly selected sequences will significantly prolong already time demanding analysis, especially when using the accurate algorithms for larger datasets. For details on strategies see MAFFT [http://mafft.cbrc.jp/alignment/software/algorithms/algorithms.html#GLE]. |
Revision as of 10:23, 19 June 2015
Create consensus from Alignments
On the Grid form select sequences (cells) to include in the analysis. Then click Create consensus from alignments option in the Selected cells (rows) menu. Select desired alignment algorithm (default is set to global alignment) and double-check remaining options, then click Done button to create consensus.
Note: Greatly increasing the number of randomly selected sequences will significantly prolong already time demanding analysis, especially when using the accurate algorithms for larger datasets. For details on strategies see MAFFT [1].
