Difference between revisions of "Template:Run BLAST(settings)"
From SEED
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To use the BLAST against NCBI database select "remote (NCBI)" option for DATABASE SOURCE.<br> | To use the BLAST against NCBI database select "remote (NCBI)" option for DATABASE SOURCE.<br> | ||
Choose database and modify other blast options as needed. Then click '''RUN (removes previous results)''' button to start. <br> | Choose database and modify other blast options as needed. Then click '''RUN (removes previous results)''' button to start. <br> | ||
| − | Note: | + | Note: Computer must be connected to the internet for the remote option.<br> |
[[File:BlastSettingsRemote.png]] | [[File:BlastSettingsRemote.png]] | ||
Revision as of 11:48, 24 April 2015
Run BLAST(settings)
To run blast remotely against NCBI (need to be connected to the internet) or against local database click Run BLAST (settings) in BLAST menu on the BLAST form.
remote search
To use the BLAST against NCBI database select "remote (NCBI)" option for DATABASE SOURCE.
Choose database and modify other blast options as needed. Then click RUN (removes previous results) button to start.
Note: Computer must be connected to the internet for the remote option.
local database search
To BLAST against previously created local database. Select "local" option for database source and directory where database is stored by "Select local database file(s)" button. You can also set the "number of threads" to speed up the searching process.
